Search results

No SVTYPE=INV in AGGREGATED SVMODEL

Status: Open.

#171 In DecodeGenetics/graphtyper;

· zuyan413 opened on Jan 19, 2026

merge bams issue

Status: Open.

#170 In DecodeGenetics/graphtyper;

· xuefenfei712 opened on Jan 12, 2026

When calling and genotyping SVs among very closely related populations, the false positive rate is very high.

Status: Open.

#169 In DecodeGenetics/graphtyper;

· kuangzhuoran opened on Dec 31, 2025

Recommended FT filter parameters

Status: Open.

#168 In DecodeGenetics/graphtyper;

· zhujiahua700403 opened on Nov 3, 2025

Negative count in genotype output of Graphtyper genotype_sv

Status: Open.

#167 In DecodeGenetics/graphtyper;

· sroener opened on Aug 7, 2025

Graphtyper vcf_merge failing with error code 139 for VCFs containing SVs

Status: Open.

#166 In DecodeGenetics/graphtyper;

· sroener opened on Aug 4, 2025

adding new samples to already generated vcf files of SNPs

Status: Open.

#165 In DecodeGenetics/graphtyper;

· BioInf2305 opened on Jul 1, 2025

SV genotyping: Multiple BAMs for single sample

Status: Open.

#164 In DecodeGenetics/graphtyper;

· tgong1 opened on May 20, 2025

Pre-processing alignments with bamshrink before genotyping with --no_bamshrink

Status: Open.

#163 In DecodeGenetics/graphtyper;

· malthesr opened on Mar 21, 2025

Scalable Genotyping for Large Cohorts

Status: Open.

#162 In DecodeGenetics/graphtyper;

· ytt01 opened on Mar 5, 2025

can some argument change the criteria to obtain high-confidence SV genotype call with low coverage NGS data?

Status: Open.

#161 In DecodeGenetics/graphtyper;

· liuqi-C opened on Feb 26, 2025

Genotype difference between Graphtyper & SURVIVOR

Status: Open.

#160 In DecodeGenetics/graphtyper;

· Sreelekshmi-291 opened on Feb 20, 2025