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a tool for inferring species tree from sequencing reads
Python 161 20
Infers a phylogenetic tree from protein structures
Jupyter Notebook 108 20
FastOMA is a scalable software package to infer orthology relationship.
Python 99 17
Python 93 7
Infering ancestral synteny with hierarchical orthologous groups
Python 38 4
Phylo.IO JS tree viewer
JavaScript 36 13
using ESM2 to translate amino acids to 3di sequences to create foldseek
Phylogenetic profiling with orthology data
Automatic benchmarking of Fastoma over time
foldtree2
OMAmer - tree-driven and alignment-free protein assignment to sub-families
Materials for the 2026 summer school
Nextflow pipeline to convert OMA to OMA browser
Improve phylogenetic inference by amplifying multiple sequence alignment with homologous sequences
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