Releases: TravisWheelerLab/BATH
Release list
Release
Release candidate 3 for BATH 2.0 with new spliced alignments, SIMD implementations for frameshift-aware dynamic programming, and improvements to both sensitivity and specificity. Fixes a bug in local bias filtering.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Release candidate 3 for BATH 2.0 with new spliced alignments, SIMD implementations for frameshift-aware dynamic programming, and improvements to both sensitivity and specificity. Changes to ORF translation by esl-translate and bathsearch so that ORFs no longer span long regions of degenerate nucleotides.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Release candidate 2 for BATH 2.0 with new spliced alignments, SIMD implementations for frameshift-aware dynamic programming, and improvements to both sensitivity and specificity. This release adds a splice signal column to --exontblout output.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Release candidate for BATH 2.0 with new spliced alignments, SIMD implementations for frameshift-aware dynamic programming, and improvements to both sensitivity and specificity.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Better ORF filtering reduces run times by approximately 1/3 with almost no loss in sensitivity.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Faster hmm building when the user supplies an MSA or sequence file as the query.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
This release should provide more accurate E-values.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
Bias scoring for the frameshift pipeline more successfully filters out low-quality repetitive hits.
Release Assets
| OS | Architecture | Link |
|---|---|---|
| MacOS | M1/M2/M3 (ARM 64-bit) | Download |
| MacOS | Intel/AMD 64-bit | Download |
| Ubuntu | ARM 64-bit | Download |
| Ubuntu | Intel/AMD 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
Release
What's Changed
- Adding release table by @tyuhasbio5 in #9
- Update update_release_table.py by @tyuhasbio5 in #11
New Contributors
- @tyuhasbio5 made their first contribution in #9
Full Changelog: https://github.com/TravisWheelerLab/BATH/commits/v1.0.0
Release Assets
| OS | Architecture | Link |
|---|---|---|
| Ubuntu | ARM 64-bit | Download |
***(For Macs) To address the Mac binary signing restriction, use the following command:
sudo xattr -dr com.apple.quarantine <path to file>/my-binary-amd64
